AIChE's website is experiencing issues with Login, online registration, join, renew and other transactions. We are working to resolve the problem and apologize for the inconvenience.
SEED 2015 Program
Wednesday, June 10 | |
8:00-12:15 | Registration Check-In |
9:00-9:30 | Coffee served |
9:30-9:45 | Welcome - Dan Gibson, Synthetic Genomics |
9:45-10:00 | Background on Mark Ptashne |
10:00-12:00 | Session 1: Systems Modelling Chair: Pam Silver, Harvard University |
10:00-10:30 | Georg Seelig, University of Washington - Learning the Sequence Determinants of Exon Definition from Millions of Random Synthetic Sequences |
10:30-11:00 | Howard Salis, Penn State - Scalable System-Wide Design of TF- and dCas9-Based Genetic Circuits |
11:00-11:30 | Andrea Weisse, University of Edinburgh - Quantifying Host-Circuit Interactions with a Mechanistic Chassis Model |
11:30-12:00 | John Fisk, Colorado State University - Biological Insights from a Computational Simulation of the M13 Bacteriophage Life Cycle |
12:00-2:00 | Lunch |
2:00-4:00 | Registration Check-In |
2:00-4:00 | Session 2: Biomedical Applications Chair: Ron Weiss, MIT |
2:00-2:30 | Jeff Way, Wyss Institute - Spatial and Quantitative Optimization of Engineered Multi-Element Therapeutic Proteins |
2:30-3:00 | Kyle Cady, SGI - Engineering Bacteriophage to Address Multidrug-Resistant Pathogens |
3:00-3:30 | Yvonne Chen, UCLA - Engineering Smarter and Stronger T Cells for Cancer Immunotherapy |
3:30-4:00 | Steve Shih, JBEI - µsynth: A Versatile Microfluidic Device for Automating the Synthetic Biology Process |
4:00-4:30 | Coffee Break |
4:30-6:30 | Session 3: Biological Circuits and Context Chair: Richard Murray, Caltech |
4:30-5:00 | John Dueber, UC Berkeley - Use of an enzyme-coupled biosensor to engineer a BIA fermentation pathway from glucose in Saccharomyces cerevisiae |
5:00-5:30 | Stanley Qi, Stanford University - CRISPR Genetic Circuits for Genome Control and Interfacing |
5:30-6:00 | Eric Klavins, University of Washington - Toward Synthetic Multicellular Behaviors in Yeast |
6:00-6:30 | Sri Kosuri, UCLA - Synthetic Approaches to Studying Cis-Regulation |
6:30-7:30 | Reception |
Thursday, June 11 | |
7:30-12:00 | Registration Check-In |
8:00-8:30 | Breakfast |
8:30-9:30 | Keynote: Pam Silver, Harvard University - Designing Biology for a Healthy World |
9:30-10:00 | Coffee Break |
10:00-12:00 | Session 4: Metabolism, Metabolomics and Engineering Metabolism Chair: Chris Voigt, MIT |
10:00-10:30 | Stephanie Culler, Genomatica - The development of platform-based technologies for the optimization of sustainably produced chemicals |
10:30-11:00 | Kris Prather, MIT - Metabolite Valves: Dynamic Control of Metabolic Flux for Pathway Engineering |
11:00-11:30 | Diego Oyarzun, Imperial College London - Gene Circuits for Self-Tuning Metabolic Pathways |
11:30-12:00 | Tammy Hsu, UC Berkeley - Protecting Groups for Improved Control of Indigo Biosynthesis |
12:00-1:30 | Lunch |
1:30-3:30 | Session 5: Agriculture and Water Chair: Stephanie Culler, Genomatica |
1:30-2:00 | Virginia Ursin, Monsanto - What do Soybeans Have to do with Sustainable use of our Oceans? |
2:00-2:30 | Mary Dunlop, University of Vermont - Engineering Robust Hosts to Improve Microbial Biofuel Production |
2:30-3:00 | Huirong Gao, Pioneer - Targeted Integration of Genes into the Maize Genome Facilitated By Cas9-gRNA System |
3:00-3:30 | Coffee Break |
3:30-5:30 | Session 6: Advancing Synthetic Biology Tools, Automation and Analytical Technologies Chair: Alicia Jackson, DARPA |
3:30-3:45 | Introduction - Alicia Jackson, DARPA |
3:45-4:10 | Emily Leproust, Twist Bioscience - Broadband DNA Synthesis |
4:10-4:35 | Ben Gordon, MIT/Broad Foundry - Rapid Prototyping of Genetic Programs |
4:35-5:05 | Jacob Beal, Raytheon - Synthetic Biology Open Language (SBOL): Community-Driven Standard for Communication of Synthetic Biology Designs |
5:05-5:30 | Ron Weiss, MIT |
5:30-7:00 | Poster Session A |
Friday, June 12 | |
7:30-12:00 | Registration Check-In |
8:00-8:30 | Breakfast |
8:30-9:30 | Keynote: Jennifer Doudna, UC Berkeley - Re-writing Genomes: Discoveries to Applications |
9:30-10:00 | Coffee Break |
10:00-12:00 | Session 7: DNA and RNA Based Synthetic Biology Chair: Yvonne Chen, UCLA |
10:00-10:30 | Erik Winfree, Caltech - Designing and verifying molecular circuits made of DNA |
10:30-11:00 | Rebecca Schulman, Johns Hopkins University - Powered DNA Strand Displacement Circuits for Continuous Environmental Monitoring and Memory |
11:00-11:30 | Shaunak Sen, Indian Institute of Technology - Design of a Toolbox of RNA Thermometers |
11:30-12:00 | Niles Pierce, Caltech - Dynamic RNA Nanotechnology |
12:00-2:00 | Lunch and NIH Mentoring Session |
2:00-3:00 | Session 8: Minimal Systems Chair: Barry Canton, Ginkgo Bioworks |
2:00-2:30 | Elisa Franco, UC Riverside - Bottom Up Construction of Dynamic Biomolecular Materials |
2:30-3:00 | Michelle O'Malley, UC Santa Barbara - Reconstructing Anaerobic Microbiomes from the ‘Bottom-up': New Techniques to Decipher Interwoven Metabolism |
3:00-4:45 | Student Session Chair: Barry Canton, Ginkgo Bioworks |
3:00-3:15 | Daniel A. Martin-Alarcon, MIT - A Modular Protein Architecture for Generalized RNA Targeting: Development and Application to RNA Monitoring, Control, and Protein Scaffolding |
3:15-3:30 | Thomas Prescott, Oxford - Designing Conservation Relations in Layered Synthetic Biomolecular Networks |
3:30-4:00 | Coffee Break |
4:00-4:15 | Hoang Long Pham, National University of Singapore - Directed Evolution of Acid-Tolerant Phenotype Using an Engineered pH-Riboswitch |
4:15-4:30 | Neda Hassanpour, Tufts - Enabling Selection in Directed Evolution of Enzymes Via Cellular Engineering |
4:30-4:45 | Enoch Yeung, Caltech - Quantifying and Modeling Compositional Context Effects on Synthetic Biocircuits in E. coli |
4:45-5:15 | ACS Synthetic Biology Young Investigator Award Lecture Chair: Ranjini Prithviraj, ACS Synthetic Biology |
5:15-6:45 | Poster Session |
7:00- | Off site party at Ginkgo Bioworks |
Saturday, June 13 | |
7:30-9:30 | Registration Check-In |
8:00-8:30 | Breakfast |
8:30-9:30 | Keynote: Martin Fussenegger, ETH Zurich - Prosthetic Gene Networks for Biomedical Applications |
9:30-11:00 | Session 9: Biological Parts Chair: Jeff Way, Wyss Institute for Biologically Inspired Engineering |
9:30-10:00 | Caroline Ajo-Franklin, LBL - Controlling Organisms Electrically with Synthetic Biology |
10:00-10:30 | Stacy Anne-Morgan, UC Berkeley - Towards the High–Throughput Construction of Fluorescent Biosensors |
10:30-11:00 | Erik Carlson, Northwestern University - A System for Unprecedented Ribosome Engineering in Living E. coli |
11:00-11:30 | Coffee Break |
11:30-1:00 | Session 10: Microbial Communities and Microbiome Genomics Chair: Dan Gibson, Synthetic Genomics |
11:30-12:00 | Giles Oldroyd, John Innes Institute - Engineering nitrogen fixing symbiotic associations in cereals |
12:00-12:30 | Michael Fischbach, UCSF - Insights from a global view of secondary metabolism: Small molecules from the human microbiota |
12:30-1:00 | Peter Nguyen, Harvard University - Synthetic Biology Engineering of Biofilms As Nanomaterials Factories |